LINCS Workflow

Download RNA-Seq data from LINCS

The NeuroLINCS and the DToxS centers collect RNA-Seq data. Processed data, scripts, pipelines and downstream analyses are also available for these datasets.

Obtaining RNA-Seq datasets from the LINCS Data Portal

  1. Open the "Datasets" section on the LINCS Data Portal.
  2. Select “RNA-Seq” in a left panel under “Method”
LINCS Data Portal Filters
  1. Select the RNA-Seq datasets in the data browser
LINCS Data Portal Browser

Obtaining RNA-Seq datasets from the DToxS website

  1. Open the “Downloads” tab on the DToxS website and login
  2. Open the "Data & Resources" tab and click on the "DATA" icon shown below
DToxS Data Icon
  1. Open the “Transcriptomics” tab and select “Raw Sequence Data”
DToxS Request Data
  1. Click on the "Request Data" button and write an email to request the data

Obtaining RNA-Seq datasets from iLINCS

  1. Open the "Datasets" tab on the iLINCS website
  2. In the "Assay" dropdown menu, select "RNA-Seq"
iLINCS Dropdown Menu
  1. Click the “Analyze” button and on the dataset page select “Samples”
iLINCS Analysis
  1. Filter the data if necessary and click the “Download selected samples data” button to download the filtered data
iLINCS Filters